welch16
2019-09-10 db8fcaa6e55028efe111653924b301ccf7892813
search: welch16 (committer)
2019-09-10 welch16
adding script to calculate odds ratio of snp models only
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2019-09-10 welch16
adding emca4 interaction analysis to see if it improves prediction performa...
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2019-08-14 welch16
Adding report
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2019-08-14 welch16
adding svm runs
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2019-08-14 welch16
adding runs
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2019-08-14 welch16
adding codes for RFEST init run
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2019-08-14 welch16
amia paper submit
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2019-08-13 welch16
results file, with comparisons of cases and controls
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2019-08-13 welch16
updating codes and stuff
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2019-07-23 welch16
finished imputation of missing values
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2019-07-22 welch16
Fixed format
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2019-07-22 welch16
adding RFEST runs cleaning data scripts
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2019-07-11 welch16
finished an preliminary run of the breast cancer analysis
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2019-06-28 welch16
wrote scripts to add many group lasso like models
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2019-06-19 welch16
re-processed models to center and scale before, and added an exploration of...
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2019-06-03 welch16
wrote script to fit predictive models / with the baseline penalty or adapti...
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2019-05-28 welch16
wrote script to parse and impute the data into matrices
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2019-05-07 welch16
wrote code to impute survey missing at random values
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2019-05-06 welch16
wrote code to clean survey data
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2019-04-18 welch16
added script to clean all at the snp levels
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2019-04-05 welch16
wrote script to change the new mayo data from vcf to Rdata, and then query ...
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2019-03-20 welch16
Added line to impute with condor
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2019-03-20 welch16
script to convert / process / prepare vcf files for imputation
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2019-03-20 welch16
removed indels because they are not in the BC77 set
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2019-03-20 welch16
changed name
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2019-03-20 welch16
added failed pipeline to impute with impute2
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2019-03-15 welch16
adding script to convert to oxford format for imputation
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2019-03-15 welch16
finished formats
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2019-03-13 welch16
renamed files and directories to make it more consistent
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2019-03-13 welch16
added code to change the format of the snp data
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2019-02-27 welch16
adding ASCAT method to description
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2019-02-26 welch16
started summary of how to replicate the cell paper
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2019-02-25 welch16
added exploratory analysis of the luo et al dataset to the document
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2019-02-25 welch16
Merge branch 'TCR_blast'
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2019-02-22 welch16
updated the rievew with one more current paper, and added a quick analysis ...
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2019-02-21 welch16
added lines to liftover the 313 snps
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2019-02-20 welch16
added venn diagrams to the document, showing that there is an error in the ...
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2019-02-20 welch16
added search for snp positions from rs ids
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2019-02-19 welch16
started notebook comparing snp sets
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2019-02-19 welch16
added tibble of the 313 brest cancer snps of Mavaddat et al
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2019-02-19 welch16
added a common set test on the method
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2019-02-14 welch16
added note on the new distribution of survey variables
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2019-02-07 welch16
added an exploratory script to parse the data from the xls files that cindy...
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2019-02-04 welch16
fixed irene's corrections and added a few more plots
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2019-02-01 welch16
added code to format in prettier way
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2019-02-01 welch16
finished analysis of genotype for the email
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2019-01-31 welch16
wrote script to make the clone files prettier for manual inspection
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2019-01-29 welch16
found issue with some mayo snps
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2019-01-28 welch16
Merge branch 'snp_qc'
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2019-01-28 welch16
updated the code to check genotype quality scores too
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